Cheap Flight Deals to San Juan Islands WA from CA $159

Feel at ease with free flight cancellations within 24 hours of booking

Change your flight without a fee on select flights

How to find cheap flights to San Juan Islands?

The cheapest prices found with in the last 7 days for return flights were CA $208 and CA $159 for one-way flights to San Juan Islands for the period specified. Prices and availability are subject to change. Additional terms apply

OriginDestinationTravel datesFlights from*
SEABellinghamJune 22 to June 29CA $208
BOSSeattleJuly 9 to July 16CA $332
BWISeattleAugust 27 to August 31CA $336
DCABellinghamJune 9 to June 13CA $1,085
*Prices include taxes and fees
OriginDestinationTravel datesFlights from*
BWISeattleJune 8 to June 12CA $532
BOSSeattleJune 7 to August 23CA $614
*Prices include taxes and fees

Your guide to flights to San Juan Islands, WA

Harbour Air Seaplanes, WestJet fly to San Juan Islands, so use Travelocity to search, find, and compare some truly tempting deals from the 4 airlines—that way you can be sure you’ve found the best deal for you. A flight to San Juan Islands WA currently costs between CA $208 and CA $1,085. Prices vary, but for the best fares, travel in July when prices are at their lowest.  

Top tips for finding cheap flights to San Juan Islands  

The cheapest flight for a round trip to San Juan Islands is currently CA $208. When you search for flights to San Juan Islands, enter your preferred travel dates then click on ‘flexible dates’ to compare cheap flight tickets to San Juan Islands for nearby days.  The cheapest month to travel to San Juan Islands is June from our list of deals available.  

But if you’re flexible about when you travel, you can find great deals on flights across the year. If you’re planning a vacation, you can save more on Travelocity when you bundle flights with car rental and hotel bookings, too. Many airlines currently offer flexible booking options, so look for flights offering no change fees.   

How to cancel flights to San Juan Islands 

We know plans change, that’s why at Travelocity, we make it as easy as possible for you to cancel or amend your plane tickets. Go to My Trips, enter your itinerary number, then follow the instructions. Many airlines let you cancel flights online free of charge if you booked it in the last 24 hours. Visit Customer Service for more advice.  

Why you should book your flight to San Juan Islands with Travelocity 

We have top deals on plane tickets even for last minute flights to San Juan Islands, so you can simply type in your travel dates and compare our best prices. Booking with Travelocity means you get flexible cancellation options, 24/7 support, and, thanks to our Price Match Promise, if the airfare drops after you book, you can get a refund! Whether you’re planning a business trip, weekend getaway, or a family vacation—let Travelocity get you to San Juan Islands for less. 

Find The Perfect Hotel For After Your Flight

Amazing Place to Stay After Flight to San Juan Islands

The Orca Inn

The Orca Inn

2 out of 5
770 Mullis St., Friday Harbor, WA
The price is CA $186 per night from Jun 28 to Jun 29
CA $186
CA $207 total
includes taxes & fees
Jun 28 - Jun 29
Stay at this motel in Friday Harbor. Enjoy free WiFi, free parking, and a picnic area. Our guests praise the helpful staff and the clean rooms in our reviews. ...
7.6/10 Good! (975 reviews)
Teeny tiny but just fine
"Super tiny room but it was clean and perfect for a night on the island. Paid $100 for a queen bed the night before a half marathon race, definitely a deal snag with some of the pricier options. They provide coffee in the morning, but the small room really encourages you to explore the island! Our ..."

Reviewed on May 27, 2025

The Orca Inn
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Our Top San Juan Islands hotel with Airport Shuttles

Earthbox Inn & Spa

Earthbox Inn & Spa

2.5 out of 5
410 Spring Street, Friday Harbor, WA
The price is CA $352 per night from Jun 1 to Jun 2
CA $352
CA $390 total
includes taxes & fees
Jun 1 - Jun 2
Book a stay at this spa hotel in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the helpful staff and the clean rooms ...
8.6/10 Excellent! (894 reviews)
"Lovely property with beautiful grounds."

Reviewed on May 22, 2025

Earthbox Inn & Spa
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Luxury Hotels in San Juan Islands

The Orca Inn

The Orca Inn

2 out of 5
770 Mullis St., Friday Harbor, WA
The price is CA $186 per night from Jun 28 to Jun 29
CA $186
CA $207 total
includes taxes & fees
Jun 28 - Jun 29
Stay at this motel in Friday Harbor. Enjoy free WiFi, free parking, and a picnic area. Our guests praise the helpful staff and the clean rooms in our reviews. ...
7.6/10 Good! (975 reviews)
Teeny tiny but just fine
"Super tiny room but it was clean and perfect for a night on the island. Paid $100 for a queen bed the night before a half marathon race, definitely a deal snag with some of the pricier options. They provide coffee in the morning, but the small room really encourages you to explore the island! Our ..."

Reviewed on May 27, 2025

The Orca Inn
WATER VIEWS of Puget Sound and the Olympic Mountains in a Garden Setting

WATER VIEWS of Puget Sound and the Olympic Mountains in a Garden Setting

Friday Harbor
Stay at this cottage in Friday Harbor. Enjoy free WiFi, a garden, and laundry facilities. Popular attractions San Juan Golf & Tennis Club and San Juan Island ...
Wonderful country escape with great view and hosts
"The cottage was the perfect place for a wonderful get away on San Juan Island. Mary is a very creative artist and has decorated the cottage beautifully and provided absolutely everything we needed for our stay. The gardens are filled with fantastic flowers and the patio and view are a great place ..."

Reviewed on Oct. 17, 2024

WATER VIEWS of Puget Sound and the Olympic Mountains in a Garden Setting
Earthbox Inn & Spa

Earthbox Inn & Spa

2.5 out of 5
410 Spring Street, Friday Harbor, WA
The price is CA $352 per night from Jun 1 to Jun 2
CA $352
CA $390 total
includes taxes & fees
Jun 1 - Jun 2
Book a stay at this spa hotel in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the helpful staff and the clean rooms ...
8.6/10 Excellent! (894 reviews)
"Lovely property with beautiful grounds."

Reviewed on May 22, 2025

Earthbox Inn & Spa
Save an average of 15% on thousands of hotels when you're signed in
Bird Rock Hotel

Bird Rock Hotel

2 out of 5
35 First Street, Friday Harbor, WA
The price is CA $265 per night from Jun 2 to Jun 3
CA $265
CA $294 total
includes taxes & fees
Jun 2 - Jun 3
Stay at this hotel in Friday Harbor. Enjoy free WiFi, daily housekeeping, and a garden. Our guests praise the bathrooms in our reviews. Popular attractions Whale ...
8.8/10 Excellent! (339 reviews)
"Excellent and prompt communication from staff. Easy remote check-in. Very lovely space and comfortable accommodations."

Reviewed on Feb. 23, 2025

Bird Rock Hotel
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Family Friendly Hotels in San Juan Islands

Historic lodge, new wing, ocean-front, private beach, kayaks, hot tub, and more!

Historic lodge, new wing, ocean-front, private beach, kayaks, hot tub, and more!

Eastsound
Book a stay at this beach vacation home in Eastsound. Enjoy a beach locale, a garden, and laundry facilities. Popular attractions Crescent Beach and The Funhouse ...
Unique stay with easy beach access
"Consider yourself lucky to stay at this place! Great location: not too far from town/ferry; located on an accessible beach to explore. We stayed for 4 nights, and it was perfect for our short trip. The host was very accommodating & helpful for us first-time visitors to Orcas Island. We are so appreciative ..."

Reviewed on Oct. 12, 2024

Historic lodge, new wing, ocean-front, private beach, kayaks, hot tub, and more!
Westcott Bay Waterfront pet friendly home. just minutes from Roche Harbor.

Westcott Bay Waterfront pet friendly home. just minutes from Roche Harbor.

Friday Harbor
Book a stay at this beach vacation home in Friday Harbor. Enjoy a beach locale, a garden, and laundry facilities. Our guests praise the property condition in ...
9.8/10 Exceptional! (325 reviews)
Blissful feeling
"This is our second visit to this property and has become our favorite vacation rental. The peaceful property has amazing views and lovely grounds that soothe to soul (and give our dog space to run and explore). The house is perfect as well with comfortable beds and a well equipped kitchen,"

Reviewed on May 25, 2025

Westcott Bay Waterfront pet friendly home. just minutes from Roche Harbor.
Waterfront Village Beach House

Waterfront Village Beach House

Lopez Island
Book a stay at this beach vacation home in Lopez Island. Enjoy a beach locale, a garden, and laundry facilities. Popular attractions Lopez Island Vineyards and ...
10/10 Exceptional! (137 reviews)
Lopez waterfront home
"Everything about the house and our stay was perfect. We stayed with family from England and we all said it was a wonderful experience on Lopez Island, including the weather!"

Reviewed on May 11, 2025

Waterfront Village Beach House
Save an average of 15% on thousands of hotels when you're signed in
Earthbox Inn & Spa

Earthbox Inn & Spa

2.5 out of 5
410 Spring Street, Friday Harbor, WA
The price is CA $352 per night from Jun 1 to Jun 2
CA $352
CA $390 total
includes taxes & fees
Jun 1 - Jun 2
Book a stay at this spa hotel in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the helpful staff and the clean rooms ...
8.6/10 Excellent! (894 reviews)
"Lovely property with beautiful grounds."

Reviewed on May 22, 2025

Earthbox Inn & Spa
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Best San Juan Islands Flight and Hotel Packages

San Juan Islands flight + hotel packages - economy flights

Price found within the past 48 hours. Click for updated prices.
Americas Best Value Inn Lynnwood Seattle
1 Hotel Seattle
Mediterranean Inn
Don't see what you're looking for?
See all available trips from Kelowna to San Juan Islands
View all trips

Need a car after flight to San Juan Islands?

Plane Tickets To San Juan Islands

Although you may try and resist the urge, you know that when the travel bug comes, there is only one way to get rid of it. Thankfully, Travelocity is here to help nip that travel bug in the bud with great deals on flights to San Juan Islands. Browse through our inventory to explore a wide range of cheap flights to San Juan Islands to solidify your next big trip out of town. Whether you are heading out on a business trip, exploring a place you have never been for pleasure or are bringing the family on the annual vacation, we have the perfect getaway waiting for you. In no time, you will be day dreaming of your plane landing in San Juan Islands as you anxiously await to exit the plane and explore what San Juan Islands has to offer. Considering all the amazing local food and culture in San Juan Islands, we won't hold this against you.

When you are ready to embark on your next big adventure, Travelocity will be right here waiting to open the doors to the garden so that you can go and smell the roses. When you decide to book and travel is entirely up to you, but don't wait too long because we have some of the best deals on the web and they won't last long. Take time to go through our huge selection of cheap flights to San Juan Islands to find the best deals that fit into your budget. If browsing on your phone while your boss isn't looking is more your thing (we promise we won't tell), consider checking out Travelocity's mobile app which allows you to take advantage of all our flights to San Juan Islands without having to compromise your work computer's search history. If you are looking to save even more, you can easily save up to $537 when you bundle one of our cheap flights to San Juan Islands with one of our hotels. So why are you waiting around? There is no better time than now to start booking that next trip. Start your search now to book one of our flights to San Juan Islands today!

*Price based on the lowest price found within past 24 hours and based upon one night stay for two adults over the next thirty days. Prices and availability subject to change. Additional terms may apply.