Book Cheap Hotels in San Juan Island

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Tonight
Check prices in San Juan Island for tonight, Sep 5 - Sep 6
Sep 5 - Sep 6
Tomorrow night
Check prices in San Juan Island for tomorrow night, Sep 6 - Sep 7
Sep 6 - Sep 7
Next weekend
Check prices in San Juan Island for next weekend, Sep 11 - Sep 13
Sep 11 - Sep 13

Most frequently booked San Juan Island hotels

The Orca Inn

The Orca Inn

2 out of 5
770 Mullis St Friday Harbor WA
Free cancellation
Reserve now, pay when you stay
4.83 km from city centre
The price is CA $134 per night
CA $134
CA $149 total
Oct 1 - Oct 2
includes taxes & fees
Stay at this hotel in Friday Harbor. Enjoy free WiFi, free parking, and housekeeping. Popular attractions San Juan Islands Museum of Art and San Juan Historical Society and Museum are located nearby.
Parking included
Free WiFi
Inn to the Woods B&B

Inn to the Woods B&B

3.5 out of 5
46 Elena Drive Friday Harbor WA
2.35 km from city centre
Get rates
Stay at this B&B in Friday Harbor. Enjoy free breakfast, free WiFi, and free parking. Popular attractions Reuben Tarte Memorial Park and Mt. Grant Preserve are located nearby.
Breakfast included
Pet-friendly
Friday Harbor Suites

Friday Harbor Suites

2.5 out of 5
680 Spring Street Friday Harbor WA
4.55 km from city centre
The price is CA $247 per night
CA $247
CA $273 total
Oct 4 - Oct 5
includes taxes & fees
Stay at this hotel in Friday Harbor. Enjoy free WiFi, free parking, and a free ferry terminal shuttle. Our guests praise the helpful staff and the clean rooms in our reviews. Popular attractions San Juan Historical Society and Museum and San Juan Islands Museum of Art are located nearby.
Hot tub
Parking included
Earthbox Inn & Spa

Earthbox Inn & Spa

3 out of 5
410 Spring Street Friday Harbor WA
4.8 km from city centre
The price is CA $318 per night
CA $318
CA $352 total
Oct 1 - Oct 2
includes taxes & fees
Book a stay at this spa hotel in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the helpful staff and the clean rooms in our reviews. Popular attractions San Juan Islands Museum of Art and Whale Museum are located nearby.
Pool
Hot tub
Discovery Inn

Discovery Inn

2 out of 5
1016 Guard St. Friday Harbor WA
3.84 km from city centre
The price is CA $217 per night
CA $217
CA $240 total
Oct 6 - Oct 7
includes taxes & fees
Stay at this hotel in Friday Harbor. Enjoy free WiFi, free parking, and slippers. Popular attractions San Juan Historical Society and Museum and San Juan Islands Museum of Art are located nearby.
Hot tub
Parking included
Snug Harbor Resort

Snug Harbor Resort

2.5 out of 5
1997 Mitchell Bay Rd Friday Harbor WA
7 km from city centre
The price is CA $432 per night
CA $432
CA $477 total
Oct 6 - Oct 7
includes taxes & fees
Stay at this hotel in Friday Harbor. Enjoy free WiFi, free parking, and a marina. Our guests praise the helpful staff in our reviews. Popular attractions English Camp and San Juan County Park are located nearby.
Parking included
Free WiFi
Bird Rock Hotel

Bird Rock Hotel

2 out of 5
35 First Street Friday Harbor WA
4.88 km from city centre
The price is CA $221 per night
CA $221
CA $245 total
Oct 1 - Oct 2
includes taxes & fees
Stay at this hotel in Friday Harbor. Enjoy free WiFi, daily housekeeping, and a garden. Popular attractions Whale Museum and San Juan Islands Museum of Art are located nearby.
Free WiFi
Housekeeping
Roche Harbor Resort

Roche Harbor Resort

3 out of 5
248 Reuben Memorial Dr Friday Harbor WA
8.35 km from city centre
The price is CA $328 per night
CA $328
CA $380 total
Sep 28 - Sep 29
includes taxes & fees
Book a stay at this spa resort in Friday Harbor. Enjoy an outdoor pool, a full-service spa, and 3 restaurants. Popular attractions Roche Harbor Marina and San Juan Islands Sculpture Park are located nearby.
Pool
Spa
Friday Harbor House

Friday Harbor House

3.5 out of 5
130 West Street Friday Harbor WA
4.84 km from city centre
The price is CA $547 per night
CA $547
CA $605 total
Oct 5 - Oct 6
includes taxes & fees
Book a stay at this business-friendly hotel in Friday Harbor. Enjoy free WiFi, free parking, and breakfast (surcharge). Our guests praise the helpful staff in our reviews. Popular attractions Whale Museum and San Juan Islands Museum of Art are located nearby.
Parking included
Free WiFi
Don't see what you're looking for?
See all available properties in San Juan Island
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Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Top family friendly San Juan Island hotel deals

Westcott Bay Waterfront pet friendly home. just minutes from Roche Harbor.

Westcott Bay Waterfront pet friendly home. just minutes from Roche Harbor.

Friday Harbor WA
Get rates
10/10 Exceptional! (374 reviews)

Top hotels in San Juan Island for Extended Stay

✨NEW✨ Bright in-town Penthouse with roof deck 😎

✨NEW✨ Bright in-town Penthouse with roof deck 😎

Friday Harbor WA
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

San Juan Island hotels essential information

Accommodation
799 hotels
Lowest Price
CA $149
Highest Price
CA $605
Popular hotels
The Orca Inn, Inn to the Woods B&B, Friday Harbor Suites, Earthbox Inn & Spa, Discovery Inn , Snug Harbor Resort, Bird Rock Hotel, Roche Harbor Resort, Friday Harbor House

Frequently asked questions

Where can I find cheap hotels in San Juan Island?
At Travelocity you'll find really nice hotels in San Juan Island at great prices. We source incredible prices with our trusted partners, so you have a tempting selection of cheap hotels to choose from. If you can be flexible on dates and location, consider staying at a hotel near San Juan Island rather than in San Juan Island. We may find you even better rates, too.
How do I find the best San Juan Island hotel deals?
Simple! On Travelocity, look through the fantastic offers we've already found in San Juan Island then use our filters to find a great deal that's perfect for you. Enter your travel dates, select the number of rooms you need, and we'll do the rest. You can get great discounts on flights and car hire, too, when you bundle.
How much does it cost to stay in a hotel in San Juan Island?
The cheapest hotel in San Juan Island is CA $149 This price was available within the past 7 days, for stays with a check-in date within the next year. Of course, the price you pay depends on your dates of travel, the length of your stay, and the hotel's location. Prices and availability are subject to change. Additional terms apply.
How many hotels are in San Juan Island?
There are 799 hotels in San Juan Island on Travelocity.
What are the best hotels in San Juan Island?
San Juan Island has so many great hotels to choose from at Travelocity — and it's so easy to find the perfect one. Just choose one of our popular pre-selected hotels with great reviews, or you can refine your search to build your ideal stay. Simply filter hotels based on price or star rating, or select properties with a pool, a hot tub, or a range of other amenities and pick the best place to stay in San Juan Island for you!
When is the best time to visit San Juan Island?
If you want the joy of a fun-filled trip in peak season, visit San Juan Island during March, April and May. If you'd prefer the peace of off-season, book a stay during quieter months, such as October, November and December.
When is the cheapest time to stay in San Juan Island?
Based on historic data is usually the cheapest month to visit San Juan Island. However, we have incredible deals all year round, so we're confident you'll find a room in your budget whenever you choose to travel.
Are there any great family-friendly hotels in San Juan Island?
There are multiple hotels in San Juan Island that will please the whole family. Do you need adjoining rooms, babysitting services or a swimming pool? We've got you covered. Use our family filter to narrow your search down and use guest reviews to help you pick the perfect place for your next family trip to San Juan Island. We have plenty of kid-friendly hotels in San Juan Island to choose from on Travelocity!
Why book a hotel in San Juan Island through Travelocity?
Because we have the top hotels in San Juan Island! We want to help you travel more and worry less. That's why we've put the most amazing hotel, car rental, and flight deals in one place. When you search for hotels with us, you know you're getting fantastic prices with no hidden fees and free cancellation on most properties up to 24 hours before your stay. If you become a Travelocity member, you also get exclusive member discounts. Sign up today!
How do I cancel my hotel booking in San Juan Island on Travelocity?
Canceling your booking with Travelocity is easy. Sign into your account and select My Trips. Here, you will see your cancellation options. We offer free cancellation on many properties.

Recent San Juan Island hotel reviews by fellow wanderers

The Orca Inn

The Orca Inn

4 out of 5
Posted 13 hours ago
Travelocity Verified Review
"Owners very accommodating, let us stash our luggage there since we arrived before check-in. Convenient location a short hike up the hill from the ferry. Rooms very small and basic, more of a place to sleep than hang out. My wife said to think of it as camping, and that helped, but in that case maybe knock 20 or 30 dollars off the price. We found a large spider in the shower which we took to live with a nice family in the country. There was a sign saying to moderate hot water usage, as each room has its own on-demand water heater or something like that, but we didn’t encounter any issues as we showered together. We had lots of water left at the end of each shower…and we enjoy our showers. Shower together! It’s good for the environment, and it’s good for a marriage. The walls are indeed thin as others have mentioned, but we didn’t have any real issue with this except for the morning someone at the nearby market decided to operate a forklift at 5am. Most seemed to do as we did and just use it as a place to sleep, and we were there over a weekend. All in all, recommended as a very basic but more than adequate place to sleep at the end of your day’s adventures. The owners clearly work very hard and are focused on making this a success."
A verified traveller stayed at The Orca Inn
The Orca Inn