Find and compare 3 Star hotels in Shinjuku

Start date: Check-in selected.
To Date
End date: Check-out

Save an extra 10% or more on select hotels with Member Discounts

Access exclusive hotel deals, only with the Travelocity app

Check prices for these dates

Next weekend
In two weeks

Featured Shinjuku 3 Star hotels

Nippon Seinenkan Hotel

Nippon Seinenkan Hotel

3.5 out of 5
4-1 Kasumigaoka cho, Shinjuku-ku Tokyo Tokyo
Fully refundableReserve now, pay when you stay
Book a stay at this business-friendly hotel in Tokyo. Enjoy breakfast (surcharge), in-room massages, and a 24-hour front desk. Our guests praise the helpful ...
9.6/10 Exceptional! (1,216 reviews)
Nice onsen

Reviewed on Jan 2, 2026

Opens in a new windowNippon Seinenkan Hotel
APA Hotel Shinjuku Kabukicho Tower

APA Hotel Shinjuku Kabukicho Tower

3 out of 5
1-20-2 Kabukicho Tokyo
Fully refundableReserve now, pay when you stay
The price is CA $85 per night from Jan 4 to Jan 5
CA $85
CA $105 total
Jan 4 - Jan 5
Stay at this hotel in Tokyo. Enjoy free WiFi, breakfast (surcharge), and parking (surcharge). Our guests praise the helpful staff and the clean rooms in our ...
8.2/10 Very Good! (2,805 reviews)
It was perfect. It was in a great location.

Reviewed on Dec 31, 2025

Opens in a new windowAPA Hotel Shinjuku Kabukicho Tower
Apa Hotel Higashi Shinjuku Kabukicho Tower

Apa Hotel Higashi Shinjuku Kabukicho Tower

3 out of 5
2-31-12 Kabukicho Tokyo Tokyo
Fully refundableReserve now, pay when you stay
The price is CA $76 per night from Jan 4 to Jan 5
CA $76
CA $94 total
Jan 4 - Jan 5
Stay at this hotel in Tokyo. Enjoy free WiFi, breakfast (surcharge), and a 24-hour front desk. Our guests praise the helpful staff and the clean rooms in our ...
8.8/10 Excellent! (1,874 reviews)
.

Reviewed on Jan 2, 2026

Opens in a new windowApa Hotel Higashi Shinjuku Kabukicho Tower
THE KNOT TOKYO Shinjuku

THE KNOT TOKYO Shinjuku

3 out of 5
4-31-1 Nishi-Shinjuku, Shinjuku-ku Tokyo Tokyo-to
Fully refundableReserve now, pay when you stay
The price is CA $82 per night from Jan 6 to Jan 7
CA $82
CA $90 total
Jan 6 - Jan 7
Stay at this hotel in Tokyo. Enjoy free WiFi, 2 restaurants, and 2 bars/lounges. Our guests praise the breakfast and the restaurant in our reviews. Popular attractions ...
8.8/10 Excellent! (2,005 reviews)
Second time booking at Knot. First was during Tokyo Marathon. I will book again when I visit Tokyo. It may be a bit of a walk to Shinjuku Station but the place is not chaotic which I prefer. The restaurant at the second floor is very good too aside from the bread they sell at the lobby.

Reviewed on Dec 27, 2025

Opens in a new windowTHE KNOT TOKYO Shinjuku
Sotetsu Fresa Inn Higashi Shinjuku

Sotetsu Fresa Inn Higashi Shinjuku

3 out of 5
7-27-9 Shinjuku Shinjuku-ku Tokyo Tokyo-to
Fully refundableReserve now, pay when you stay
The price is CA $52 per night from Jan 6 to Jan 7
CA $52
CA $63 total
Jan 6 - Jan 7
Stay at this hotel in Tokyo. Enjoy free WiFi, breakfast (surcharge), and parking (surcharge). Our guests praise the breakfast and the helpful staff in our reviews. ...
8.8/10 Excellent! (1,745 reviews)
Staff were very polite and courteous. Their attitude was outstanding. Location very close to the station. Rooms were clean enough, size of the room was ok too according to Japan standards.

Reviewed on Dec 27, 2025

Opens in a new windowSotetsu Fresa Inn Higashi Shinjuku
SOTETSU GRAND FRESA TAKADANOBABA

SOTETSU GRAND FRESA TAKADANOBABA

3 out of 5
1-chome-27-7 Takadanobaba Tokyo Tokyo
Fully refundableReserve now, pay when you stay
The price is CA $193 per night from Feb 3 to Feb 4
CA $193
CA $213 total
Feb 3 - Feb 4
Stay at this hotel in Tokyo. Enjoy free WiFi, breakfast (surcharge), and a 24-hour front desk. Our guests praise the helpful staff and the clean rooms in our ...
9.4/10 Exceptional! (903 reviews)
It was my third stay @ Sotetsu Grand Freda Takadanobaba. Love the convenience of having the JR Yamanote & Tozai lines just a minute away.

Reviewed on Dec 29, 2025

Opens in a new windowSOTETSU GRAND FRESA TAKADANOBABA
Nishitetsu Inn Shinjuku

Nishitetsu Inn Shinjuku

3 out of 5
7-23-2 Nishi-shinjuku Tokyo Tokyo-to
The price is CA $215 per night from Jan 13 to Jan 14
CA $215
CA $239 total
Jan 13 - Jan 14
Stay at this hotel in Tokyo. Enjoy free WiFi, breakfast (surcharge), and parking (surcharge). Our guests praise the helpful staff and the property condition ...
8.8/10 Excellent! (999 reviews)
Convenient location

Reviewed on Dec 1, 2025

Opens in a new windowNishitetsu Inn Shinjuku
WPÜ HOTEL SHINJUKU

WPÜ HOTEL SHINJUKU

3 out of 5
7-10-5 Nishishinjuku Tokyo Tokyo
Fully refundableReserve now, pay when you stay
Stay at this hotel in Tokyo. Enjoy free WiFi, a 24-hour front desk, and laundry facilities. Our guests praise the helpful staff and the clean rooms in our reviews. ...
9.2/10 Wonderful! (1,306 reviews)
The lobby hosts art and community events

Reviewed on Dec 23, 2025

Opens in a new windowWPÜ HOTEL SHINJUKU
Rhodes Kagurazaka Hotel

Rhodes Kagurazaka Hotel

3 out of 5
1-17 Saikumachi Tokyo Tokyo
The price is CA $65 per night from Jan 5 to Jan 6
CA $65
CA $72 total
Jan 5 - Jan 6
Stay at this apartment in Tokyo. Enjoy free WiFi, laundry facilities, and slippers. Popular attractions Tokyo Dome and Tokyo Imperial Palace are located ...
7.2/10 Good! (158 reviews)
Check in instructions were pretty clear. Contact the hotel ahead of time to deliver luggage via services like Yamato. The stay was pleasant as I enjoyed the area. The bed was a bit stiff and I had an issue with the room but the staff quickly resolved it. The whole room feels more like an apartment ...

Reviewed on Dec 2, 2025

Opens in a new windowRhodes Kagurazaka Hotel
JR WEST GROUP VIA INN SHINJUKU

JR WEST GROUP VIA INN SHINJUKU

3 out of 5
5-11-16 Shinjuku Tokyo Tokyo
The price is CA $87 per night from Feb 2 to Feb 3
CA $87
CA $97 total
Feb 2 - Feb 3
Stay at this hotel in Tokyo. Enjoy free WiFi, breakfast (surcharge), and in-room massages. Our guests praise the helpful staff and the clean rooms in our reviews. ...
9/10 Wonderful! (1,075 reviews)
The room was clean, comfortable, and cozy. It was spacious for one person. It is conveniently located near to Shinjuku.

Reviewed on Dec 27, 2025

Opens in a new windowJR WEST GROUP VIA INN SHINJUKU
Don't see what you're looking for?
See all available properties in Shinjuku
View all properties
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.